Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs1378224 | chr4:169168337 | G/C | 2.09E-8 | 509 | 37.33 | 39.23 | 3.1 | KM Plot |
KIRC | rs137927562 | chr8:67261542 | GAATA/G | 0 | 506 | 37.47 | 35.7 | 0.6 | KM Plot |
KIRC | rs138040262 | chr6:33501544 | AT/A | 5.32E-6 | 508 | 37.18 | 37.77 | 3.67 | KM Plot |
KIRC | rs138210257 | chr10:33014354 | TTG/T | 3.31E-6 | 506 | 37.37 | 37.63 | 7.33 | KM Plot |
KIRC | rs138267171 | chr1:6345828 | ATGCTTCAGGG/A | 8.21E-11 | 504 | 37.47 | 37.77 | 2.3 | KM Plot |
KIRC | rs138337842 | chr20:45100283 | A/AT | 4.1E-5 | 506 | 39.23 | 31.07 | 4.75 | KM Plot |
KIRC | rs138553892 | chr4:169170246 | A/AT | 2.18E-8 | 508 | 37.35 | 37.67 | 3.1 | KM Plot |
KIRC | rs138742157 | chr11:34759989 | G/T | 1.05E-7 | 501 | 37.47 | 33.35 | 3.3 | KM Plot |
KIRC | rs139063750 | chr19:46312068 | C/T | 7.94E-8 | 496 | 38.47 | 28.65 | 1.77 | KM Plot |
KIRC | rs139178598 | chr15:24353500 | G/A | 2.67E-8 | 497 | 37.35 | 32.7 | 3.3 | KM Plot |
KIRC | rs139405921 | chr21:47810133 | CAGG/C | 3.64E-5 | 502 | 37.2 | 44.3 | 6.87 | KM Plot |
KIRC | rs139469649 | chr2:109342621 | G/A | 2.88E-12 | 506 | 37.77 | 26.3 | 2.3 | KM Plot |
KIRC | rs139581303 | chr2:67551045 | A/AC | 8.2E-8 | 495 | 37.47 | 37.73 | 2.03 | KM Plot |
KIRC | rs139617782 | chr15:24409112 | A/G | 2.41E-8 | 492 | 37.67 | 30.62 | 3.3 | KM Plot |
KIRC | rs139730843 | chr2:109354773 | C/T | 3.04E-12 | 506 | 37.77 | 26.3 | 2.3 | KM Plot |